Assignment 4: CLASSIFICATION - Decision Trees.¶

Objective:¶

To build the Decision Tree model that predicts the signs_of_mental_illness of the victim from the Fatal Police Shooting Data and regularize the model and compare the performance.

Fatal Police Shooting Data¶

Objective:¶

To build the Decision Tree model that predicts the signs_of_mental_illness of the victim from the Fatal Police Shooting Data and regularize the model and compare the performance.

About dataset
The dataset consists following columns

  1. id : unqiue identifier of each victim
  2. name : name of a victim
  3. date : date on fatal shooting
  4. manner_of_death : manner of death classification
    • Shot
    • Shot and Tasered
  5. armed : indicates that the victim was armed with some sort of implement that a police officer believed could inflict harm
    • undetermined: it is not known whether or not the victim had a weapon
    • unknown: the victim was armed, but it is not known what the object was
    • unarmed: the victim was not armed
  6. age : age of victim
  7. gender : the gender of the victim. The Post identifies victims by the gender they identify with if reports indicate that it differs from their biological sex.
    • M: Male
    • F: Female
    • None: Unknown
  8. race : race of victim
    • W: White, non-Hispanic
    • B: Black, non-Hispanic
    • A: Asian
    • N: Native American
    • H: Hispanic
    • O: Other
    • None: unknown
  9. city : the municipality where the fatal shooting took place. Note that in some cases this field may contain a county name if a more specific municipality is unavailable or unknown.
  10. state : two-letter postal code abbreviation
  11. signs_of_mental_illness : News reports have indicated the victim had a history of mental health issues, expressed suicidal intentions or was experiencing mental distress at the time of the shooting.
  12. threat_level : These would include incidents where officers or others were shot at, threatened with a gun, attacked with other weapons or physical force, etc. The attack category is meant to flag the highest level of threat. The other and undetermined categories represent all remaining cases. Other includes many incidents where officers or others faced significant threats.
  13. flee : News reports have indicated the victim was moving away from officers
    • Foot
    • Car
    • Not fleeing
  14. body_camera : News reports have indicated an officer was wearing a body camera and it may have recorded some portion of the incident.

Import all neccessary libraries¶

In [1]:
import pandas as pd
import numpy as np
from sklearn import preprocessing
import copy
from sklearn.model_selection import train_test_split, RandomizedSearchCV, GridSearchCV
from sklearn.tree import DecisionTreeClassifier
from sklearn.metrics import classification_report,accuracy_score,precision_score,recall_score
# calculate accuracy measures and confusion matrix
from sklearn import metrics
import warnings
warnings.filterwarnings('ignore')
# For Visualizing plots
import matplotlib.pyplot as plt
%matplotlib inline
import seaborn as sns

Let's import the data¶

In [2]:
police = pd.read_csv("fatal-police-shootings-data.csv")
police.head()
Out[2]:
id name date manner_of_death armed age gender race city state signs_of_mental_illness threat_level flee body_camera
0 3 Tim Elliot 2015-01-02 shot gun 53.0 M A Shelton WA True attack Not fleeing False
1 4 Lewis Lee Lembke 2015-01-02 shot gun 47.0 M W Aloha OR False attack Not fleeing False
2 5 John Paul Quintero 2015-01-03 shot and Tasered unarmed 23.0 M H Wichita KS False other Not fleeing False
3 8 Matthew Hoffman 2015-01-04 shot toy weapon 32.0 M W San Francisco CA True attack Not fleeing False
4 9 Michael Rodriguez 2015-01-04 shot nail gun 39.0 M H Evans CO False attack Not fleeing False

Let's Understand the data¶

In [3]:
police.info()

<class 'pandas.core.frame.DataFrame'>
RangeIndex: 4478 entries, 0 to 4477
Data columns (total 14 columns):
 #   Column                   Non-Null Count  Dtype  
---  ------                   --------------  -----  
 0   id                       4478 non-null   int64  
 1   name                     4478 non-null   object 
 2   date                     4478 non-null   object 
 3   manner_of_death          4478 non-null   object 
 4   armed                    4230 non-null   object 
 5   age                      4309 non-null   float64
 6   gender                   4473 non-null   object 
 7   race                     4105 non-null   object 
 8   city                     4478 non-null   object 
 9   state                    4478 non-null   object 
 10  signs_of_mental_illness  4478 non-null   bool   
 11  threat_level             4478 non-null   object 
 12  flee                     4299 non-null   object 
 13  body_camera              4478 non-null   bool   
dtypes: bool(2), float64(1), int64(1), object(10)
memory usage: 428.7+ KB
In [4]:
police.describe()
Out[4]:
id age
count 4478.000000 4309.000000
mean 2502.721974 36.879322
std 1404.978671 13.067598
min 3.000000 6.000000
25% 1286.250000 27.000000
50% 2505.500000 35.000000
75% 3718.750000 45.000000
max 4927.000000 91.000000
In [5]:
police.describe(include='object').T
Out[5]:
count unique top freq
name 4478 4332 TK TK 129
date 4478 1551 2018-06-29 9
manner_of_death 4478 2 shot 4250
armed 4230 84 gun 2489
gender 4473 2 M 4265
race 4105 6 W 2059
city 4478 2168 Phoenix 68
state 4478 51 CA 680
threat_level 4478 3 attack 2829
flee 4299 4 Not fleeing 2868

Question 1: 1 Mark¶

Display the percentage of missing values present in each column of the data and round it off to 2 decimal place.

In [6]:
round(police.isnull().sum() / police.count() * 100, 2)
# TODO: Code to fill: 

# 1. '<<__A__>>' --> Fill appropriate method for finding missing values along with functions such as sum or count to calculate percentage
# 2. '<<__B__>>' --> Fill appropriate method for finding missing values along with functions such as sum or count to calculate percentage
Out[6]:
id                         0.00
name                       0.00
date                       0.00
manner_of_death            0.00
armed                      5.86
age                        3.92
gender                     0.11
race                       9.09
city                       0.00
state                      0.00
signs_of_mental_illness    0.00
threat_level               0.00
flee                       4.16
body_camera                0.00
dtype: float64
In [7]:
# So,how many total missing values do we have?
total_cells = np.product(police.shape)
total_missing = police.isnull().sum().sum()

# percent of data that is missing
percent_missing = (total_missing/total_cells) * 100
print(percent_missing)

1.5536272570662923

Let's clean the data¶

In [8]:
# Since we observe only 1.6% of null or missing values, let's drop those missing values.

# Remove all the rows that contain missing value
police = police.dropna()
In [9]:
police.isnull().sum()
Out[9]:
id                         0
name                       0
date                       0
manner_of_death            0
armed                      0
age                        0
gender                     0
race                       0
city                       0
state                      0
signs_of_mental_illness    0
threat_level               0
flee                       0
body_camera                0
dtype: int64
In [10]:
# Drop redundant or not so useful columns for model building
police = police.drop(['id','date','city','name','state'], axis=1)
In [11]:
# We take a copy of our source data.
df = copy.deepcopy(police)
df.head()
Out[11]:
manner_of_death armed age gender race signs_of_mental_illness threat_level flee body_camera
0 shot gun 53.0 M A True attack Not fleeing False
1 shot gun 47.0 M W False attack Not fleeing False
2 shot and Tasered unarmed 23.0 M H False other Not fleeing False
3 shot toy weapon 32.0 M W True attack Not fleeing False
4 shot nail gun 39.0 M H False attack Not fleeing False

Encoding¶

Question 2: 1 Mark¶

  • convert the body_camera column to binary numbers. False = 0 and True = 1. Convert it's datatype to int.
  • convert the gender column to binary numbers. Male = 1 and Female = 0. Convert it's datatype to int.
  • convert the signs_of_mental_illness column to binary numbers. False = 0 and True = 1. Convert it's datatype to int.
  • convert the manner_of_death column to binary numbers. shot = 0 and shot and Tasered = 1. Convert it's datatype to int.
In [12]:
le = preprocessing.LabelEncoder()    # using label encoder class in the object le, 
                                      # convert the following values of these attributes to integer datattype values

# use appropriate methods from LabelEncoder class to transform the following into into binary nos

df["body_camera"]= le.fit_transform(df["body_camera"])
df["gender"]= le.fit_transform(df["gender"])
df["signs_of_mental_illness"]= le.fit_transform(df["signs_of_mental_illness"])
df["manner_of_death"]= le.fit_transform(df['manner_of_death'])


df['manner_of_death'] = df['manner_of_death'].astype('int')

# convert the following into int datatype

df['gender'] = df['gender'].astype(int)
df['signs_of_mental_illness'] = df['signs_of_mental_illness'].astype(int)
df['body_camera'] = df['body_camera'].astype(int)

# TODO: Code to fill: 

# 1. '<<__A__>>' --> use appropriate method for encoding
# 2. '<<__B__>>' --> use appropriate method for encoding
# 3. '<<__C__>>' --> use appropriate method for encoding
# 4. '<<__D__>>' --> use appropriate method for encoding
# 5. '<<__E__>>' --> use appropriate method for converting to 'int' datatype
# 6. '<<__F__>>' --> use appropriate method for converting to 'int' datatype
# 7. '<<__G__>>' --> use appropriate method for converting to 'int' datatype
In [13]:
df.head()
Out[13]:
manner_of_death armed age gender race signs_of_mental_illness threat_level flee body_camera
0 0 gun 53.0 1 A 1 attack Not fleeing 0
1 0 gun 47.0 1 W 0 attack Not fleeing 0
2 1 unarmed 23.0 1 H 0 other Not fleeing 0
3 0 toy weapon 32.0 1 W 1 attack Not fleeing 0
4 0 nail gun 39.0 1 H 0 attack Not fleeing 0
In [14]:
# Decision tree in Python can take only numerical / categorical columns. It cannot take string / object types. 
# The following code loops through each column and checks if the column type is object then converts those columns
# into categorical with each distinct value becoming a category or code.


for column in df.columns: # Loop through all columns in the dataframe
    if df[column].dtype == 'object': # Only apply for columns with categorical strings
        df[column] = pd.Categorical(df[column]).codes # Replace strings with an integer

# TODO: Code to fill: 

# 1. '<<__A__>>' --> Fill appropriate name for iterating over columns
# 2. '<<__B__>>' --> Fill appropriate feature 
# 3. '<<__C__>>' --> Fill appropriate feature
In [15]:
df.info()

<class 'pandas.core.frame.DataFrame'>
Index: 3663 entries, 0 to 4477
Data columns (total 9 columns):
 #   Column                   Non-Null Count  Dtype  
---  ------                   --------------  -----  
 0   manner_of_death          3663 non-null   int64  
 1   armed                    3663 non-null   int8   
 2   age                      3663 non-null   float64
 3   gender                   3663 non-null   int64  
 4   race                     3663 non-null   int8   
 5   signs_of_mental_illness  3663 non-null   int64  
 6   threat_level             3663 non-null   int8   
 7   flee                     3663 non-null   int8   
 8   body_camera              3663 non-null   int64  
dtypes: float64(1), int64(4), int8(4)
memory usage: 186.0 KB
In [16]:
df.head()
Out[16]:
manner_of_death armed age gender race signs_of_mental_illness threat_level flee body_camera
0 0 30 53.0 1 0 1 0 2 0
1 0 30 47.0 1 5 0 0 2 0
2 1 75 23.0 1 2 0 1 2 0
3 0 74 32.0 1 5 1 0 2 0
4 0 53 39.0 1 2 0 0 2 0

Let's build our models¶

We are going to build a Decision Tree model. In this model we are going to predict signs_of_mental_illness.

Question 3: 1 Mark¶

Split the Independent and Dependent attributes seperately from the given datset and save those in X and y variables respectively.

In [17]:
X = df.drop(columns=['signs_of_mental_illness'],axis=1) # Independent attributes
y = df['signs_of_mental_illness']  # Dependent attribute


# TODO: Code to fill: 

# 1. '<<__A__>>' --> write code to extract only Independent attributes here and save them in X variable
# 2. '<<__B__>>' --> write code to extract only Dependent attribute here and save them in y variable
In [18]:
train_char_label = ['No', 'Yes']

Question 4: 1 Mark¶

Split the data into train and test, with a train, test ratio of 80:20

In [19]:
x_train, x_test, y_train, y_test =  train_test_split(X, y, test_size=0.2, random_state=7)

# TODO: Code to fill: 

# 1. '<<__A__>>' --> Fill approprite code to split the X and y into train and test

Question 5: 1 Mark¶

Build a decision tree model using appropriate class from sklearn library and fit that model on train data.

In [20]:
dt_model = DecisionTreeClassifier(criterion = 'entropy' ) 
dt_model.fit(x_train, y_train) 

# TODO: Code to fill: 

# 1. '<<__A__>>' --> build a decision tree model using approriate class from sklearn library
# 2. '<<__B__>>' --> Fit your training data here
Out[20]:
DecisionTreeClassifier(criterion='entropy')
In a Jupyter environment, please rerun this cell to show the HTML representation or trust the notebook.
On GitHub, the HTML representation is unable to render, please try loading this page with nbviewer.org.
DecisionTreeClassifier(criterion='entropy')

Question 6: 1 Mark¶

Predict the above built model on test data.

In [21]:
y_predict = dt_model.predict(x_test)

# TODO: Code to fill: 

# 1. '<<__A__>>' -->  from the built decision tree model predict your test data
In [22]:
print(dt_model.score(x_train , y_train))
print(dt_model.score(x_test , y_test))

0.9023890784982935
0.6725784447476125

Question 7: 1 Mark¶

Print confusion matrix of test data

In [23]:
print(metrics.confusion_matrix(y_test,y_predict)) # display a confusion matrix of test data using approriate class from sklearn library

# TODO: Code to fill: 

# 1. '<<__A__>>' -->  fill appropriate code to print confusion matrix
# 2. '<<__B__>>' -->  fill appropriate code to print confusion matrix
# 3. '<<__C__>>' -->  fill appropriate code to print confusion matrix

[[439  92]
 [148  54]]
In [24]:
from IPython.display import Image  
#import pydotplus as pydot
from sklearn import tree
from os import system

decision_tree = open('decision_tree.dot','w')
dot_data = tree.export_graphviz(dt_model, out_file= decision_tree , feature_names = list(x_train), class_names = list(train_char_label))

decision_tree.close()

print (pd.DataFrame(dt_model.feature_importances_, columns = ["Imp"], index = x_train.columns))

                      Imp
manner_of_death  0.035417
armed            0.176048
age              0.484823
gender           0.030830
race             0.075365
threat_level     0.072599
flee             0.084917
body_camera      0.040001
In [25]:
# You can also copy the script in the .dot file and paste it at http://webgraphviz.com/ to get tree view
# or create a .png as below
system("dot -Tpng decision_tree.dot -o decision_tree.png")
Image("decision_tree.png")
Out[25]:
No description has been provided for this image

We can see that tree is overgrown

Regularising (pruning) the Decision Tree¶

Question 8: 1 Mark¶

Build a pruned decision tree classifier model with criterion=entropy, max_depth=6, min_samples_split=3, min_samples_leaf=1 and fit it on train data.

In [26]:
reg_dt_model = DecisionTreeClassifier(criterion='entropy',max_depth=6,min_samples_split=3, min_samples_leaf=1)
reg_dt_model = reg_dt_model.fit(x_train, y_train)                              

# TODO: Code to fill: 

# 1. '<<__A__>>' -->    Apply all suggested hyperparameters in the question and build a decision tree model
# 2. '<<__B__>>' -->    Fit your train data here
In [27]:
credit_tree_regularized = open('credit_tree_regularized.dot','w')
dot_data = tree.export_graphviz(reg_dt_model, out_file= credit_tree_regularized , feature_names = list(x_train), class_names = list(train_char_label))

credit_tree_regularized.close()

Question 9: 1 Mark¶

Display the feature importance of all the predictors from regularized or pruned decision tree model.

In [28]:
 '''Print the feature importances of all the Independendent variables or predictors to know
 which attribute has contibuted most in predition.'''

print (pd.DataFrame(reg_dt_model.feature_importances_, columns = ["Imp"], index = x_train.columns))

                      Imp
manner_of_death  0.009144
armed            0.290928
age              0.143671
gender           0.000000
race             0.136804
threat_level     0.043888
flee             0.346226
body_camera      0.029339
In [29]:
# You can also copy the script in the .dot file and paste it at http://webgraphviz.com/ to get tree view
# or create a .png as below
system("dot -Tpng credit_tree_regularized.dot -o credit_tree_regularized.png")
Image("credit_tree_regularized.png")
Out[29]:
No description has been provided for this image
In [30]:
y_predict = reg_dt_model.predict(x_test)

Question 10: 1 Mark¶

Check the accuracy of both train and test data of regularized decision tree model.

In [31]:
print(reg_dt_model.score(x_train, y_train)) # display the accuracy of train data using approriate class from sklearn.metrics library
print(reg_dt_model.score(x_test, y_test)) # display the accuracy of test data using approriate class from sklearn.metrics library

# TODO: Code to fill: 

# 1. '<<__A__>>' --> display the accuracy of train data using approriate class from sklearn.metrics library
# 2. '<<__B__>>' --> display the accuracy of test data using approriate class from sklearn.metrics library

0.764505119453925
0.7244201909959073
In [32]:
print(metrics.confusion_matrix(y_test, y_predict))

[[526   5]
 [197   5]]

Though accuracy reduced in train, we can observe that model is a good model without overfitting and underfitting. Also accuracy of test data increased.¶

In [ ]: